The third season began on March 14, 2009 with the three-part premiere, Transwarped, and ended on May 23, 2009. This season following the events of Transwarped focused on the Autobots' attempt to reach Cybertron in order to warn the Autobot High Council of Shockwave, who has been masquerading as Autobot Intelligence Officer Longarm Prime. Meanwhile, Megatron, Starscream, Shockwave (who replaces Blitzwing as a main character), and Lugnut plan to use the colossal Autobot Omega Supreme for constructing clones of him (dubbed as Lugnut Supremes, as they appear similar to Lugnut).

一个年轻的、麻烦缠身的女私家侦探被扔进了一个世界，在那里她必须探索深不可测的事物，找到自己。